Mesher- Specifically for hair- needed!

No this isn't a request to make a hair. Sort of a request to help fix a hair. :) Basically I've never been able to focus on one project, and decided to take time away from working on the skin blend and my challenge with an attempt to complete my hair texture project. Basically I wanted to replace ALL of EA's hairs with a nicer texture. I was almost complete, and then I realized that I actually prefer a texture that looks similar to the EA one, and after a couple days of blending and such, I think I have a good compromise.

So I went back and started small, redoing hairs for Fast Lane and HELS. Whilst I was redoing them, I had a stroke of inspiration on how to make the hairs look...well better. After alpha editing some of meshes, and loading up the game, I was horrified to see terrible alpha issues! Pictures below for better description.

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If anyone knows how to fix these issues and willing to help a complete meshing noob out I would very much appreciate it.